BIROn - Birkbeck Institutional Research Online

    The structure of cyanine 5 terminally attached to double-stranded DNA: implications for FRET studies

    Iqbal, A. and Wang, L. and Thompson, Katherine C. and Lilley, D.M.J. and Norman, D.G. (2008) The structure of cyanine 5 terminally attached to double-stranded DNA: implications for FRET studies. Biochemistry 40 (30), pp. 7857-7862. ISSN 0006-2960.

    Full text not available from this repository.

    Abstract

    Fluorescence resonance energy transfer, FRET, can be used to obtain long-range distance information for macromolecules and is particularly powerful when used in single-molecule studies. The determination of accurate distances requires knowledge of the fluorophore position with respect to the macromolecule. In this study we have used NMR to determine the structure of the commonly used fluorophore indocarbocyanine-5 (Cy5) covalently attached to the 5′-terminus of double-helical DNA. We find that Cy5 is predominantly stacked onto the end of the duplex, in a manner similar to an additional base pair. This is very similar to the behavior of Cy3 terminally attached to DNA and suggests that the efficiency of energy transfer between Cy3 and Cy5, that are attached to nucleic acids in this way, will exhibit significant dependence on fluorophore orientation.

    Metadata

    Item Type: Article
    School: Birkbeck Schools and Departments > School of Science > Biological Sciences
    Research Centre: Structural Molecular Biology, Institute of (ISMB)
    Depositing User: Administrator
    Date Deposited: 04 Aug 2010 14:09
    Last Modified: 06 Dec 2016 10:38
    URI: http://eprints.bbk.ac.uk/id/eprint/1099

    Statistics

    Downloads
    Activity Overview
    0Downloads
    115Hits

    Additional statistics are available via IRStats2.

    Archive Staff Only (login required)

    Edit/View Item Edit/View Item