Favia, A.D. and Nobeli, Irene (2011) Using chemical structure to infer biological function. In: Guha, R. and Bender, A. (eds.) Computational Approaches in Cheminformatics and Bioinformatics. Hoboken, U.S.: Wiley, pp. 211-238. ISBN 9780470384411.

Kahraman, A. and Morris, R.J. and Laskowski, R.A. and Favia, A.D. and Thornton, Janet M. (2010) On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins. Proteins 78 (5), pp. 1120-1136. ISSN 1097-0134.

Persson, B. and Kallberg, Y. and Bray, J.E. and Bruford, E. and Dellaporta, S.L. and Favia, A.D. and Duarte, R.G. and Jörnvall, H. and Kavanagh, K.L. and Kedishvili, N. and Kisiela, M. and Maser, E. and Mindnich, R. and Orchard, S. and Penning, T.M. and Thornton, Janet M. and Adamski, J. and Oppermann, U . (2009) The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative. Chemico-Biological Interactions 178 (1-3), pp. 94-98. ISSN 1872-7786.

Nobeli, Irene and Favia, A.D. and Thornton, Janet M. (2009) Protein promiscuity and its implications for biotechnology. Nature Biotechnology 27 , pp. 157-167. ISSN 1087-0156.

Thornton, Janet M. and Favia, A.D. and Nobeli, Irene and Furnham, N. (2008) The evolution of specificity in large protein families. In: 33rd FEBS Congress & 11th IUBMB Conference: Biochemistry of Cell Regulation, June 28-July 3 2008, Athens, Greece.

Favia, A.D. and Nobeli, Irene and Glaser, F. and Thornton, Janet M. (2008) Molecular docking for substrate identification: the short-chain dehydrogenases/reductases. Journal of Molecular Biology 375 (3), pp. 855-874. ISSN 0022-2836.