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Phelan, J. and Maitra, A. and McNerney, R. and Nair, M. and Gupta, Antima and Coll, F. and Pain, A. and Bhakta, Sanjib and Clark, T.G. (2015) The draft genome of Mycobacterium aurum, a potential model organism for investigating drugs against Mycobacterium tuberculosis and Mycobacterium leprae. International Journal of Mycobacteriology 4 (3), pp. 207-216. ISSN 2212-5531.

Coll, F. and McNerney, R. and Preston, M.D and Guerra-Assunção, J.A. and Warry, A. and Hill-Cawthorne, G. and Mallard, K. and Nair, M. and Miranda, A. and Alves, A. and Perdigão, J. and Viveiros, M. and Portugal, I. and Hasan, Z. and Hasan, R. and Glynn, J.R. and Martin, Nigel and Pain, A. and Clark, T.G (2015) Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences. Genome Medicine 7 (1), ISSN 1756-994X.

Coll, F. and McNerney, R. and Guerra-Assunção, J.A. and Glynn, J.R. and Perdigão, J. and Viveiros, M. and Portugal, I. and Pain, A. and Martin, Nigel and Clark, T.G. (2014) A robust SNP barcode for typing Mycobacterium tuberculosis complex strains. Nature Communications 5 , p. 4812. ISSN 2041-1723.

Coll, F. and Preston, M. and Guerra-Assuncao, J. and Hill-Cawthorne, G. and Harris, D. and Perdigao, J. and Viveiros, M. and Portugal, I. and Drobniewski, F. and Gagneux, S. and Glynn, J. and Pain, A. and Parkhill, J. and McNerney, R. and Martin, Nigel and Clark, T. (2014) PolyTB: a genomic variation map for Mycobacterium tuberculosis. Tuberculosis 94 (3), pp. 346-354. ISSN 1472-9792.

Coll, F. and Mallard, K. and Preston, M. and Bentley, S. and Parkhill, J. and McNerney, R. and Martin, Nigel and Clark, T. (2012) SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences. Bioinformatics 28 (22), pp. 2991-2993. ISSN 1367-4803.