February 2008

Todman, S.J. and Halling-Brown, Mark D. and Davies, M.N. and Flower, D.R. and Kayikci, M. and Moss, David S. (2008) Toward the atomistic simulation of T cell epitopes automated construction of MHC: peptide structures for free energy calculations. Journal of Molecular Graphics and Modelling 26 (6), pp. 957-961. ISSN 1093-3263.

August 2008

Halling-Brown, Mark D. and Sansom, Clare E. and Davies, M.N. and Titball, R.W. and Moss, David S. (2008) Are bacterial vaccine antigens T-cell epitope depleted? Trends in Immunology 29 (8), pp. 374-379. ISSN 1471-4906.

Halling-Brown, Mark D. and Shepherd, Adrian J. (2008) Constructing computational pipelines. Methods in Molecular Biology 453 (4), pp. 451-470. ISSN 1064-3745.

Davies, M.N. and Secker, A. and Halling-Brown, Mark D. and Moss, David S. and Freitas, A.A. and Timmis, J. and Clark, E. and Flower, D.R. (2008) GPCRTree: online hierarchical classification of GPCR function. BMC Research Notes 1 , p. 67. ISSN 1756-0500.

October 2008

Halling-Brown, Mark D. and Moss, David S. and Shepherd, Adrian J. (2008) Towards a lightweight generic computational grid framework for biological research. BMC Bioninformatics 9 , ISSN 1471-2105.

December 2008

Pappalardo, F. and Zhang, P. and Halling-Brown, Mark D. and Basford, K.E. and Scalia, A. and Shepherd, Adrian J. and Moss, David S. and Motta, S. and Brusic, V. (2008) Computational simulations of the immune system for personalized medicine: state of the art and challenges. Current Pharmacogenomics and Personalized Medicine 6 (4), pp. 260-271. ISSN 1875-6921.

May 2009

Pappalardo, F. and Halling-Brown, Mark D. and Rapin, N. and Zhang, P. and Alemani, D. and Emerson, A. and Paci, P. and Duroux, P. and Pennisi, M. and Palladini, A. and Miotto, O. and Churchill, D. and Rossi, E. and Shepherd, Adrian J. and Moss, David S. and Castiglione, F. and Bernaschi, M. and Lefranc, M.P. and Brunak, S. and Motta, S. and Lollini, P.L. and Basford, K.E. and Brusic, V. (2009) ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization. Briefings in Bioinformatics 10 (3), pp. 330-340. ISSN 1467-5463.

July 2009

Halling-Brown, Mark D. and Moss, David S. and Sansom, Clare E. and Shepherd, Adrian J. (2009) A computational grid framework for immunological applications. Philosophical Transactions of the Royal Society A 367 (1898), pp. 2705-2716. ISSN 1364-503X.

August 2009

Halling-Brown, Mark D. and Shaban, R. and Frampton, D. and Sansom, Clare E. and Davies, M.N. and Flower, D.R. and Duffield, M. and Titball, R.W. and Brusic, V. and Moss, David S. (2009) Proteins accessible to immune surveillance show significant T-cell epitope depletion: implications for vaccine design. Molecular Immunology 46 (13), pp. 2699-2705. ISSN 0161-5890.

13 June 2010

Halling-Brown, Mark D. and Pappalardo, F. and Rapin, N. and Zhang, P. and Alemani, D. and Emerson, A. and Castiglione, F. and Duroux, P. and Pennisi, M. and Miotto, O. and Churchill, D. and Rossi, E. and Moss, David S. and Sansom, Clare E. and Bernaschi, M. and Lefranc, M.P. and Brunak, S. and Lund, O. and Motta, S. and Lollini, P.L. and Murgo, A. and Palladini, A. and Basford, K.E. and Brusic, V. and Shepherd, Adrian J. (2010) ImmunoGrid: towards agent-based simulations of the human immune system at a natural scale. Philosophical Transactions of the Royal Society A 368 (1920), pp. 1799-1815. ISSN 0080-4614.