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Domedel Puig, N. and Pournara, Iosifina and Wernisch, Lorenz (2010) Statistical model comparison applied to common network motifs. BMC Systems Biology 4 (1), ISSN 1752-0509.

Reid, J.E. and Evans, Kenneth J. and Dyer, N. and Wernisch, Lorenz and Ott, S. (2010) Variable structure motifs for transcription factor binding sites. BMC Genomics 11 (1), p. 30. ISSN 1471-2164.

Zhang, Y. and Hatch, K.A. and Bacon, J. and Wernisch, Lorenz (2010) An integrated machine learning approach for predicting DosR-regulated genes in Mycobacterium tuberculosis. BMC Systems Biology 4 (37), ISSN 1752-0509.

Reid, J.E. and Ott, S. and Wernisch, Lorenz (2009) Transcriptional programs: modelling higher order structure in transcriptional control. BMC Bioinformatics 10 , p. 218. ISSN 1471-2105.

Watkins, N.A. and Gusnanto, A. and de Bono, B. and De, S. and Miranda-Saavedra, D. and Hardie, D.L. and Angenent, W.G. and Attwood, A.P. and Ellis, P.D. and Erber, W. and Foad, N.S. and Garner, S.F. and Isacke, C.M. and Jolley, J. and Koch, K. and Macaulay, I.C. and Morley, S.L. and Rendon, A. and Rice, K.M. and Taylor, N. and Thijssen-Timmer, D.C. and Tijssen, M.R. and van der Schoot, C.E. and Wernisch, Lorenz and Winzer, T. and Dudbridge, F. and Buckley, C.D. and Langford, C.F. and Teichmann, S. and Göttgens, B. and Ouwehand, W.H. (2009) A HaemAtlas: characterizing gene expression in differentiated human blood cells. Blood 113 (19), pp. 1-9. ISSN 0006-4971.

dos Reis, M. and Wernisch, Lorenz (2009) Estimating translational selection in Eukaryotic Genomes. Molecular Biology & Evolution 26 (2), pp. 451-461. ISSN 0737-4038.

Zhang, Y. and Hatch, K.A. and Wernisch, Lorenz and Bacon, J. (2008) A Bayesian change point model for differential gene expression patterns of the DosR regulon of mycobacterium tuberculosis. BMC Genomics 9 (87), ISSN 1471-2164.

Pournara, Iosifina and Wernisch, Lorenz (2008) Using temporal correlation in factor analysis for reconstructing transcription factor activities. EURASIP Journal on Bioinformatics and Systems Biology , ISSN 1687-4145.

Sidders, B. and Withers, M. and Kendall, S.L. and Bacon, J. and Waddell, S.J. and Hinds, J. and Golby, P. and Movahedzadeh, F. and Cox, R.A. and Frita, R. and ten Bokum, A.M.C. and Wernisch, Lorenz and Stoker, N.G. (2007) Quantification of global transcription patterns in prokaryotes using spotted microarrays. Genome Biology 8 (12), R265. ISSN 1465-6906.

Withers, M. and Wernisch, Lorenz and dos Reis, M. (2006) Archaeology and evolution of transfer RNA genes in the Escherichia coli genome. RNA 12 , pp. 933-942. ISSN 1355-8382.

dos Reis, M. and Savva, Renos and Wernisch, Lorenz (2004) Solving the riddle of codon usage preferences: a test for translational selection. Nucleic Acids Research 32 (17), pp. 5036-5044. ISSN 0305-1048.

dos Reis, M. and Wernisch, Lorenz and Savva, Renos (2003) Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome. Nucleic Acids Research 31 (23), pp. 6976-6985. ISSN 0305-1048.