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Article

Coll, F. and McNerney, R. and Preston, M.D and Guerra-Assunção, J.A. and Warry, A. and Hill-Cawthorne, G. and Mallard, K. and Nair, M. and Miranda, A. and Alves, A. and Perdigão, J. and Viveiros, M. and Portugal, I. and Hasan, Z. and Hasan, R. and Glynn, J.R. and Martin, Nigel and Pain, A. and Clark, T.G (2015) Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences. Genome Medicine 7 (1), ISSN 1756-994X.

Coll, F. and McNerney, R. and Guerra-Assunção, J.A. and Glynn, J.R. and Perdigão, J. and Viveiros, M. and Portugal, I. and Pain, A. and Martin, Nigel and Clark, T.G. (2014) A robust SNP barcode for typing Mycobacterium tuberculosis complex strains. Nature Communications 5 , p. 4812. ISSN 2041-1723.

Martin, Nigel and Poulovassilis, Alexandra and Wang, J. (2014) A methodology and architecture embedding quality assessment in data integration. Journal of Data and Information Quality 4 (4), ISSN 1936-1955.

Coll, F. and Preston, M. and Guerra-Assuncao, J. and Hill-Cawthorne, G. and Harris, D. and Perdigao, J. and Viveiros, M. and Portugal, I. and Drobniewski, F. and Gagneux, S. and Glynn, J. and Pain, A. and Parkhill, J. and McNerney, R. and Martin, Nigel and Clark, T. (2014) PolyTB: a genomic variation map for Mycobacterium tuberculosis. Tuberculosis 94 (3), pp. 346-354. ISSN 1472-9792.

Coll, F. and Mallard, K. and Preston, M. and Bentley, S. and Parkhill, J. and McNerney, R. and Martin, Nigel and Clark, T. (2012) SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences. Bioinformatics 28 (22), pp. 2991-2993. ISSN 1367-4803.

Zamboulis, Lucas and Martin, Nigel and Poulovassilis, Alexandra (2010) Query performance evaluation of an architecture for fine-grained integration of heterogeneous grid data sources. Future Generation Computer Systems 26 (8), pp. 1073-1091. ISSN 0167-739X.

Siepen, J.A. and Belhajjame, K. and Selley, J.N. and Embury, S.M. and Paton, N.W. and Goble, C.A. and Oliver, S.G. and Stevens, R. and Zamboulis, Lucas and Martin, Nigel and Poulovassilis, Alexandra and Jones, P. and Côté, R. and Hermjakob, H. and Pentony, M.M. and Jones, D.T. and Orengo, C.A. and Hubbard, S.J. (2008) ISPIDER Central: an integrated database web-server for proteomics. Nucleic Acids Research 36 (2), W485-W490. ISSN 0305-1048.

Yeats, C. and Lees, J. and Reid, A. and Kellam, P. and Martin, Nigel and Liu, X. and Orengo, C.A. (2008) Gene3D: comprehensive structural and functional annotation of genomes. Nucleic Acids Research 36 (S1), D414-D418. ISSN 0305-1048.

Swift, S. and Tucker, A. and Vinciotti, V. and Martin, Nigel and Orengo, C.A. and Liu, X. and Kellam, P. (2004) Consensus clustering and functional interpretation of gene-expression data. Genome Biology 5 (11), ISSN 1465-6906.

Pearl, F.M.G. and Bennett, C.F. and Bray, J.E. and Harrison, A.P. and Martin, Nigel and Shepherd, Adrian J. and Sillitoe, I. and Thornton, Janet M. and Orengo, C.A. (2003) The CATH database: an extended protein family resource for structural and functional genomics. Nucleic Acids Research 31 (1), pp. 452-455. ISSN 0305-1048.

Shepherd, Adrian J. and Martin, Nigel and Johnson, Roger and Kellam, P. and Orengo, C.A. (2002) PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources. Bioinformatics 18 (12), pp. 1666-1672. ISSN 1367-4803.

Book Section

Frosini, Riccardo (2017) Optimisation techniques for flexible querying in SPARQL 1.1. In: Calì, Andrea and Wood, Peter T. and Martin, Nigel and Poulovassilis, Alexandra (eds.) Data Analytics. Lecture Notes in Computer Science 10365. Springer, pp. 106-110. ISBN 9783319607948.

Wang, J. and Martin, Nigel and Poulovassilis, Alexandra (2012) An ontology-based quality framework for data integration. In: Niedrite, L. and Strazdina, R. and Wangler, B. (eds.) Workshops on Business Informatics Research. Lecture Notes in Business Information Processing 106. Berlin, Germany: Springer Verlag, pp. 196-208. ISBN 9783642292309.

Zamboulis, Lucas and Martin, Nigel and Poulovassilis, Alexandra (2007) Bioinformatics service reconciliation by heterogeneous schema transformation. In: Cohen Boulakia, S. and Tannen, V. (eds.) Data Integration in the Life Sciences. Lecture Notes in Computer Science 4544. Berlin, Germany: Springer, pp. 89-104. ISBN 9783540732549.

Hirsch, M. and Tucker, A. and Swift, S. and Martin, Nigel and Orengo, C. and Kellam, P. and Liu, X. (2006) Improved robustness in time series analysis of gene expression data by polynomial model based clustering. In: Berthold, M.R. and Glen, R.C. and Fischer, I. (eds.) Computational Life Sciences II. Lecture Notes in Computer Science 4216. Berlin, Germany: Springer, pp. 1-10. ISBN 9783540457671.

Zamboulis, Lucas and Fan, Hao and Belhajjame, Khalid and Siepen, Jennifer and Jones, Andrew and Martin, Nigel and Poulovassilis, Alexandra and Hubbard, Simon and Embury, Suzanne and Paton, Norman (2006) Data access and integration in the ISPIDER proteomics grid. In: Leser, U. and Naumann, F. and Eckman, B. (eds.) Data Integration in the Life Sciences. Lecture Notes in Computer Science 4075. Berlin, Germany: Springer, pp. 3-18. ISBN 9783540365938.

Maibaum, M. and Zamboulis, Lucas and Rimon, G. and Orengo, C.A. and Martin, Nigel and Poulovassilis, Alexandra (2005) Cluster based integration of heterogeneous biological databases using the AutoMed toolkit. In: Ludascher, B. and Raschid, L. (eds.) Data Integration in the Life Sciences. Lecture Notes In Computer Science 3615 3615. Berlin, Germany: Springer, pp. 191-207. ISBN 9783540279679.

Maibaum, M. and Rimon, G. and Orengo, C.A. and Martin, Nigel and Poulovassilis, Alexandra (2004) BioMap: gene family based integration of heterogeneous biological databases using AutoMed metadata. In: UNSPECIFIED (ed.) Proceedings. 15th International Workshop on Database and Expert Systems Applications, 2004. Piscataway, U.S.: IEEE Computer Society, pp. 384-388. ISBN 0769521959.

Book

Calì, Andrea and Wood, Peter T. and Martin, Nigel and Poulovassilis, Alexandra, eds. (2017) Data Analytics: 31st British International Conference on Databases, BICOD 2017, London, UK, July 10–12, 2017, Proceedings. Lecture Notes in Computer Science 10365. Springer. ISBN 9783319607948.