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Acta Crystallographica Section D Biological Crystallography

Erskine, P.T. and Fokas, A. and Muriithi, C. and Rehman, H. and Yates, L.A. and Bowyer, A. and Findlow, I.S. and Hagan, R. and Werner, J.M. and Miles, Andrew J. and Wallace, Bonnie A. and Wells, S.A. and Wood, S.P. and Cooper, J.B. (2015) X-ray, spectroscopic and normal-mode dynamics of calexcitin: structure–function studies of a neuronal calcium-signalling protein. Acta Crystallographica Section D Biological Crystallography 71 (3), pp. 615-631. ISSN 0907-4449.

Biochemical and Biophysical Research Communications

Miles, Andrew J. and Fedosova, N.U. and Hoffmann, S.V. and Wallace, Bonnie A. and Esmann, M. (2013) Stabilisation of Na,K-ATPase structure by the cardiotonic steroid ouabain. Biochemical and Biophysical Research Communications 435 (2), pp. 300-305. ISSN 0006-291X.

Biochemistry

Platzer, G. and Schedlbauer, A. and Chemelli, A. and Ozdowy, P. and Coudevylle, N. and Auer, R. and Kontaxis, G. and Hartl, M. and Miles, Andrew J. and Wallace, Bonnie A. and Glatter, O. and Bister, K. and Konrat, R. (2011) The metastasis-associated extracellular matrix protein Osteopontin forms transient structure in ligand interaction sites. Biochemistry 50 (27), pp. 6113-6124. ISSN 0006-2960.

Biochimica et Biophysica Acta (BBA) - Biomembranes

Fernandez, D.I. and Sani, M.-A. and Miles, Andrew J. and Wallace, Bonnie A. and Separovic, F. (2013) Membrane defects enhance the interaction of antimicrobial peptides, aurein 1.2 versus caerin 1.1. Biochimica et Biophysica Acta (BBA) - Biomembranes 1828 (8), pp. 1863-1872. ISSN 0006-3002.

Powl, Andrew M. and Miles, Andrew J. and Wallace, Bonnie A. (2012) Transmembrane and extramembrane contributions to membrane protein thermal stability: studies with the NaChBac sodium channel. Biochimica et Biophysica Acta (BBA) - Biomembranes 1818 (3), pp. 889-895. ISSN 0006-3002.

Miles, Andrew J. and Wallace, Bonnie A. and Esmann, M. (2011) Correlation of structural and functional thermal stability of the integral membrane protein Na,K-ATPase. Biochimica et Biophysica Acta (BBA) - Biomembranes 1808 (10), pp. 2573-2580. ISSN 0006-3002.

Miles, Andrew J. and Drechsler, A. and Kristan, K. and Anderluh, G. and Norton, R.S. and Wallace, Bonnie A. and Separovic, F. (2008) The effects of lipids on the structure of the eukaryotic cytolysin equinatoxin II: a synchrotron radiation circular dichroism spectroscopic study. Biochimica et Biophysica Acta (BBA) - Biomembranes 1778 (10), pp. 2091-2096. ISSN 0006-3002.

Bioinformatics

Abdul-Gader, Ali and Miles, Andrew J. and Wallace, Bonnie A. (2011) A reference dataset for the analyses of membrane protein secondary structures and transmembrane residuesusing circular dichroism spectroscopy. Bioinformatics 27 (12), pp. 1630-1636. ISSN 1367-4803.

Biomacromolecules

Zhai, J. and Miles, Andrew J. and Pattenden, L.K. and Lee, T.H. and Augustin, M.A. and Wallace, Bonnie A. and Aguilar, M.I. and Wooster, T.J. (2010) Changes in beta-Lactoglobulin conformation at the oil/water interface of emulsions studied by synchrotron radiation circular dichroism spectroscopy. Biomacromolecules 11 (8), pp. 2136-2142. ISSN 1525-7797.

Biophysical Journal

d'Avanzo, N. and McCusker, Emily C. and Powl, Andrew M. and Miles, Andrew J. and Nichols, C.G. and Wallace, Bonnie A. (2013) Differential lipid dependence of function of bacterial sodium channel homologues. Biophysical Journal 104 (2), 14a. ISSN 0006-3495.

Meersman, F. and Atilgan, C. and Miles, Andrew J. and Bader, R. and Shang, W. and Matagne, A. and Wallace, Bonnie A. and Koch, M.H.J. (2010) Consistent picture of the reversible thermal unfolding of hen egg-white Lysozyme from experiment and molecular dynamics. Biophysical Journal 99 (7), pp. 2255-2263. ISSN 0006-3495.

Whitmore, Lee and Woollett, Benjamin and Miles, Andrew J. and Janes, R.W. and Wallace, Bonnie A. (2010) The Protein Circular Dichroism Data Bank (PCDDB) - first release of a new resource for spectroscopic data sharing. Biophysical Journal 98 (3(S1)), 196a-197a. ISSN 0006-3495.

Perrone, B. and Miles, Andrew J. and Bechinger, B. and Vrønning Hoffmann, S. and Wallace, Bonnie A. (2009) Oriented synchrotron radiation circular dichroism and linear dichroism spectroscopy of peptides in model membranes. Biophysical Journal 96 (3(S1)), 337a-337a. ISSN 0006-3495.

Chemical Society Reviews

Miles, Andrew J. and Wallace, Bonnie A. (2016) Circular dichroism spectroscopy of membrane proteins. Chemical Society Reviews 18 , pp. 4859-4872. ISSN 0306-0012.

Chirality

Janes, R.W. and Miles, Andrew J. and Woollett, Benjamin and Whitmore, Lee and Klose, D. and Wallace, Bonnie A. (2012) Circular Dichroism Spectral Data and Metadata in the Protein Circular Dichroism Data Bank (PCDDB): a tutorial guide to accession and deposition. Chirality 24 (9), pp. 751-763. ISSN 0899-0042.

European Biophysics Journal

O’Reilly, A.O. and Lattrell, A. and Miles, Andrew J. and Klinger, A.B. and Nau, C. and Wallace, Bonnie A. and Lampert, A. (2017) Mutagenesis of the NaChBac sodium channel discloses a functional role for a conserved S6 asparagine. European Biophysics Journal 46 (7), pp. 665-674. ISSN 0175-7571.

European Biophysics Journal with Biophysics letters

Miller, Wayne and Miles, Andrew J. and Wallace, Bonnie A. (2016) Structure of the C-terminal domain of the Prokaryotic Sodium Channel Orthologue NsvBa. European Biophysics Journal with Biophysics letters 45 (8), pp. 807-814. ISSN 0175-7571.

Perrone, B. and Miles, Andrew J. and Salnikov, E.S. and Wallace, Bonnie A. and Bechinger, B. (2014) Lipid interactions of LAH4, a peptide with antimicrobial and nucleic acid transfection activities. European Biophysics Journal with Biophysics letters 43 (10-11), pp. 499-507. ISSN 0175-7571.

Drechsler, A. and Miles, Andrew J. and Norton, R.S. and Wallace, Bonnie A. and Separovic, F. (2009) Effect of lipid on the conformation of the N-terminal region of equinatoxin II: a synchrotron radiation circular dichroism spectroscopic study. European Biophysics Journal with Biophysics letters 39 (1), pp. 121-127. ISSN 0175-7571.

Journal of Biological Chemistry

Chin, S. and Yang, D. and Miles, Andrew J. and Eckford, P.D.W. and Molinski, S. and Wallace, Bonnie A. and Bear, C.E. (2016) Attenuation of Phosphorylation-dependent activation of Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) by disease-causing mutations at the transmission interface. Journal of Biological Chemistry 292 (5), pp. 1988-1999. ISSN 0021-9258.

Moore, B. and Miles, Andrew J. and Guerra-Giraldez, C. and Simpson, P. and Iwata, M. and Wallace, Bonnie A. and Matthews, S.J. and Smith, D.F. and Brown, K.A. (2011) Structural basis of molecular recognition of the Leishmania Small Hydrophilic Endoplasmic Reticulum-associated Protein (SHERP) at membrane surfaces. Journal of Biological Chemistry 286 (11), pp. 9246-9256. ISSN 0021-9258.

Journal of Molecular Biology

Kintzer, A.F. and Sterling, H.J. and Tang, I.I. and Abdul-Gader, Ali and Miles, Andrew J. and Wallace, Bonnie A. and Williams, E. and Krantz, B.A. (2010) Role of the protective Antigen Octamer in the molecular mechanism of Anthrax lethal toxin stabilization in plasma. Journal of Molecular Biology 399 (5), pp. 741-758. ISSN 0022-2836.

Journal of Physical Chemistry B

Bulheller, B.M. and Miles, Andrew J. and Wallace, Bonnie A. and Hirst, J.D. (2008) Charge-transfer transitions in the vacuum-ultraviolet of protein circular dichroism spectra. Journal of Physical Chemistry B 112 (6), pp. 1866-1874. ISSN 1520-6106.

Journal of Synchrotron Radiation

Miles, Andrew J. and Janes, R.W. and Brown, A. and Clarke, D.T. and Sutherland, J.C. and Tao, Y. and Wallace, Bonnie A. and Hoffmann, S.V. (2008) Light flux density threshold at which protein denaturation is induced by synchrotron radiation circular dichroism beamlines. Journal of Synchrotron Radiation 15 , pp. 420-422. ISSN 0909-0495.

Molecular Membrane Biology

Whitfield, T. and Miles, Andrew J. and Scheinost, J.C. and Offer, J. and Wentworth, P. and Dwek, R.A. and Wallace, Bonnie A. and Biggin, P.C. and Zitzmann, N. (2011) The influence of different lipid environments on the structure and function of the hepatitis C virus p7 ion channel protein. Molecular Membrane Biology 28 (5), pp. 254-264. ISSN 0968-7688.

Nucleic Acids Research

Whitmore, Lee and Miles, Andrew J. and Mavridis, L. and Janes, R.W. and Wallace, Bonnie A. (2016) PCDDB: new developments at the Protein Circular Dichroism Data Bank. Nucleic Acids Research 45 (D1), D303-D307. ISSN 0305-1048.

Beich Frandsen, M. and Vecerek, B. and Konarev, P.V. and Sjoblom, B. and Kloiber, K. and Hammerle, H. and Rajkowitsch, L. and Miles, Andrew J. and Kontaxis, G. and Wallace, Bonnie A. and Svergun, D.I. and Konrat, R. and Blasi, U. and Djinovic Carugo, K. (2011) Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq. Nucleic Acids Research 39 (11), pp. 4900-4915. ISSN 0305-1048.

Whitmore, Lee and Woollett, Benjamin and Miles, Andrew J. and Klose, D.P. and Janes, R.W. and Wallace, Bonnie A. (2011) PCDDB: the Protein Circular Dichroism Data Bank, a repository for circular dichroism spectral and metadata. Nucleic Acids Research 39 (1), D480-D486. ISSN 0305-1048.

Whitmore, Lee and Woollett, Benjamin and Miles, Andrew J. and Klose, D.P. and Janes, R.W. and Wallace, Bonnie A. (2011) PCDDB: the protein circular dichroism data bank, a repository for circular dichroism spectral and metadata. Nucleic Acids Research 39 (S1), D480-D486. ISSN 0305-1048.

PLoS One

van Veen, H.W. and d'Avanzo, N. and McCusker, Emily C. and Powl, Andrew M. and Miles, Andrew J. and Nichols, C.G. and Wallace, Bonnie A. (2013) Differential lipid dependence of the function of bacterial sodium channels. PLoS One 8 (4), e61216. ISSN 1932-6203.

Proceedings of the National Academy of Sciences of the United States of America

Powl, Andrew M. and O’Reilly, Andrias O. and Miles, Andrew J. and Wallace, Bonnie A. (2010) Synchrotron radiation circular dichroism spectroscopy-defined structure of the C-terminal domain of NaChBac and its role in channel assembly. Proceedings of the National Academy of Sciences of the United States of America 107 (32), pp. 14064-14069. ISSN 0027-8424.

Protein Science

Miles, Andrew J. and Wallace, Bonnie A. (2018) CDtoolX, a downloadable software package for processing and analyses of Circular Dichroism Spectroscopic Data. Protein Science 27 (9), pp. 1717-1722. ISSN 0961-8368.

Yoneda, J.S. and Miles, Andrew J. and Araujo, A.P.U. and Wallace, Bonnie A. (2017) Differential dehydration effects on globular proteins and intrinsically disordered proteins during film formation. Protein Science 26 (4), pp. 718-726. ISSN 0961-8368.

Lopes, J.L.S. and Miles, Andrew J. and Whitmore, Lee and Wallace, Bonnie A. (2014) Distinct circular dichroism spectroscopic signatures of polyproline II and unordered secondary structures: applications in secondary structure analyses. Protein Science 23 (12), pp. 1765-1772. ISSN 0961-8368.

Proteins-Structure, Function and Bioinformatics

Cowieson, N.P. and Miles, Andrew J. and Robin, G. and Forwood, J.K. and Kobe, B. and Martin, J.L. and Wallace, Bonnie A. (2008) Evaluating protein : protein complex formation using synchrotron radiation circular dichroism spectroscopy. Proteins-Structure, Function and Bioinformatics 70 (2), pp. 1142-1146. ISSN 0887-3585.

Scientific Reports

Tolchard, J. and Walpole, S.J. and Miles, Andrew J. and Maytum, R. and Eaglen, L.A. and Hackstadt, T. and Wallace, Bonnie A. and Blumenschein, T.M.A. (2018) The intrinsically disordered Tarp protein from chlamydia binds actin with a partially preformed helix. Scientific Reports 8 (1), p. 1960. ISSN 2045-2322.

Spectroscopy

Miles, Andrew J. and Hoffmann, S.V. and Tao, Y. and Janes, R.W. and Wallace, Bonnie A. (2008) Synchrotron radiation circular dichroism (SRCD) spectroscopy: new beamlines and new applications in biology. Spectroscopy 21 (5-6), pp. 245-255. ISSN 0712-4813.

Structure

Whitmore, Lee and Woollett, Benjamin and Miles, Andrew J. and Janes, R.W. and Wallace, Bonnie A. (2010) The Protein Circular Dichroism Data Bank, a web-based site for access to circular dichroism spectroscopic data. Structure 18 (10), pp. 1267-1269. ISSN 0969-2126.