Browse by Research Centre

Article

Garcia-Alcalde, F. and Blanco, A. and Shepherd, Adrian J. (2010) An intuitionistic approach to scoring DNA sequences against transcription factor binding site motifs. BMC Bioinformatics 11 (1), p. 551. ISSN 1471-2105.

Gartmann, M. and Blau, M. and Armache, J. P. and Mielke, T. and Topf, Maya and Beckmann, R. (2010) Mechanism of eIF6-mediated inhibition of ribosomal subunit joining. Journal of Biological Chemistry 285 (20), pp. 14848-14851. ISSN 0021-9258.

Halling-Brown, Mark D. and Pappalardo, F. and Rapin, N. and Zhang, P. and Alemani, D. and Emerson, A. and Castiglione, F. and Duroux, P. and Pennisi, M. and Miotto, O. and Churchill, D. and Rossi, E. and Moss, David S. and Sansom, Clare E. and Bernaschi, M. and Lefranc, M.P. and Brunak, S. and Lund, O. and Motta, S. and Lollini, P.L. and Murgo, A. and Palladini, A. and Basford, K.E. and Brusic, V. and Shepherd, Adrian J. (2010) ImmunoGrid: towards agent-based simulations of the human immune system at a natural scale. Philosophical Transactions of the Royal Society A 368 (1920), pp. 1799-1815. ISSN 0080-4614.

Kintzer, A.F. and Sterling, H.J. and Tang, I.I. and Abdul-Gader, Ali and Miles, Andrew J. and Wallace, Bonnie A. and Williams, E. and Krantz, B.A. (2010) Role of the protective Antigen Octamer in the molecular mechanism of Anthrax lethal toxin stabilization in plasma. Journal of Molecular Biology 399 (5), pp. 741-758. ISSN 0022-2836.

Klose, D.P. and Wallace, Bonnie A. and Janes, R.W. (2010) 2Struc: the secondary structure server. Bioinformatics 26 (20), pp. 2624-2625. ISSN 1367-4803.

Kumar, R.A. and Pilz, D.T. and Babatz, T.D. and Cushion, T.D. and Harvey, K. and Topf, Maya and Yates, L. and Robb, S. and Uyanik, G. and Mancini, G.M.S. and Rees, M.I. and Harvey, R.J. and Dobyns, W.B. (2010) TUBA1A mutations cause wide spectrum lissencephaly (smooth brain) and suggest that multiple neuronal migration pathways converge on alpha tubulins. Human Molecular Genetics 19 (14), pp. 2817-2827. ISSN 0964-6906.

Lees, William D. and Moss, David S. and Shepherd, Adrian J. (2010) A computational analysis of the antigenic properties of Haemagglutinin in Influenza A H3N2. Bioinformatics 26 (11), pp. 1403-1408. ISSN 1367-4803.

Malet, Hélène and Topf, Maya and Clare, Daniel K. and Ebert, J. and Bonneau, F. and Basquin, J. and Drazkowska, K. and Tomecki, R. and Dziembowski, A. and Conti, E. and Saibil, Helen R. and Lorentzen, Esben (2010) RNA channelling by the eukaryotic exosome. EMBO Reports 11 (12), pp. 936-942. ISSN 1469-221X.

Meersman, F. and Atilgan, C. and Miles, Andrew J. and Bader, R. and Shang, W. and Matagne, A. and Wallace, Bonnie A. and Koch, M.H.J. (2010) Consistent picture of the reversible thermal unfolding of hen egg-white Lysozyme from experiment and molecular dynamics. Biophysical Journal 99 (7), pp. 2255-2263. ISSN 0006-3495.

Naz, T. and Dorn, J. and Poulovassilis, Alexandra (2010) Configurable meta-search in the job domain. International Journal of Web Engineering and Technology 6 (1), p. 33. ISSN 1476-1289.

Powl, Andrew M. and O’Reilly, Andrias O. and Miles, Andrew J. and Wallace, Bonnie A. (2010) Synchrotron radiation circular dichroism spectroscopy-defined structure of the C-terminal domain of NaChBac and its role in channel assembly. Proceedings of the National Academy of Sciences of the United States of America 107 (32), pp. 14064-14069. ISSN 0027-8424.

Powl, Andrew M. and de Planque, M.R.R. and Morgan, H. and Wallace, Bonnie A. (2010) The Nachbac Pore: creation and characterisation of a KcsA-like sodium channel. Biophysical Journal 98 (3(S1)), 7a-7a. ISSN 0006-3495.

Rawi, R. and Whitmore, Lee and Topf, Maya (2010) CHOYCE: a web server for constrained homology modelling with cryoEM maps. Bioinformatics 26 (13), pp. 1673-1674. ISSN 1367-4803.

Wallace, Bonnie A. (2010) Using Circular Dichroism (CD) and Synchrotron Radiation Circular Dichroism (SRCD) spectroscopy to study membrane proteins. Biophysical Journal 98 (3(S1)), 209a-210a. ISSN 0006-3495.

Wallace, Bonnie A. and Janes, R.W. (2010) Synchrotron radiation circular dichroism (SRCD) spectroscopy: an enhanced method for examining protein conformations and protein interactions. Biochemical Society Transactions 38 (4), pp. 861-873. ISSN 0300-5127.

Whitmore, Lee and Woollett, Benjamin and Miles, Andrew J. and Janes, R.W. and Wallace, Bonnie A. (2010) The Protein Circular Dichroism Data Bank (PCDDB) - first release of a new resource for spectroscopic data sharing. Biophysical Journal 98 (3(S1)), 196a-197a. ISSN 0006-3495.

Whitmore, Lee and Woollett, Benjamin and Miles, Andrew J. and Janes, R.W. and Wallace, Bonnie A. (2010) The Protein Circular Dichroism Data Bank, a web-based site for access to circular dichroism spectroscopic data. Structure 18 (10), pp. 1267-1269. ISSN 0969-2126.

Zamboulis, Lucas and Martin, Nigel and Poulovassilis, Alexandra (2010) Query performance evaluation of an architecture for fine-grained integration of heterogeneous grid data sources. Future Generation Computer Systems 26 (8), pp. 1073-1091. ISSN 0167-739X.

Zhai, J. and Miles, Andrew J. and Pattenden, L.K. and Lee, T.H. and Augustin, M.A. and Wallace, Bonnie A. and Aguilar, M.I. and Wooster, T.J. (2010) Changes in beta-Lactoglobulin conformation at the oil/water interface of emulsions studied by synchrotron radiation circular dichroism spectroscopy. Biomacromolecules 11 (8), pp. 2136-2142. ISSN 1525-7797.

Zhang, S.H. and Vasishtan, Daven and Xu, M. and Topf, Maya and Alber, F. (2010) A fast mathematical programming procedure for simultaneous fitting of assembly components into cryoEM density maps. Bioinformatics 26 (12), i261-i268. ISSN 1367-4803.

de Freitas, Sara and Rebolledo-Mendez, G. and Liarokapis, F. and Magoulas, George D. and Poulovassilis, Alexandra (2010) Learning as immersive experiences: using the four-dimensional framework for designing and evaluating immersive learning experiences in a virtual world. British Journal of Educational Technology 41 (1), pp. 69-85. ISSN 0007-1013.

Book Section

Pearce-Lazard, D. and Poulovassilis, Alexandra and Geraniou, E. (2010) The design of teacher assistance tools in an exploratory learning environment for mathematics generalisation. In: Wolpers, M. and Kirschner, P.A. and Scheffel, M. and Lindstaedt, S. and Dimitrova, V. (eds.) Sustaining TEL: From Innovation to Learning and Practice. Lecture Notes in Computer Science 6383. Berlin, Germany: Springer Verlag, pp. 260-275. ISBN 9783642160202.

Poulovassilis, Alexandra and Wood, Peter T. (2010) Combining approximation and relaxation in semantic web path queries. In: Patel-Schneider, P.F. and Pan, Y. and Hitzler, P. and Mika, P. and Zhang, L. and Pan, J.Z. and Horrocks, I. and Glimm, B. (eds.) The Semantic Web – ISWC 2010. Lecture Notes In Computer Science 6496. Berlin, Germany: Springer, pp. 631-646. ISBN 9783642177453.

Xhafa, Fatos and Poulovassilis, Alexandra (2010) Requirements for distributed event-based awareness in P2P groupware systems. In: UNSPECIFIED (ed.) International Conference on Advanced Information Networking and Applications Workshops. Washington, USA: IEEE Computer Society, pp. 220-225. ISBN 9780769540191.