A

Ashford, Paul and Hernandez duran, Anna and Greco, T.M. and Buch, A. and Sodeik, B. and Cristea, I.M. and Grünewald, K. and Shepherd, Adrian J. and Topf, Maya (2016) HVint: a strategy for identifying novel protein-protein interactions in Herpes Simplex Virus Type 1. Molecular & Cellular Proteomics 15 (9), pp. 2939-2953. ISSN 1535-9476.

B

Bullock, Joshua and Schwab, J. and Thalassinos, Konstantinos and Topf, Maya (2016) The importance of non-accessible crosslinks and solvent accessible surface distance in modelling proteins with restraints from crosslinking mass spectrometry. Molecular & Cellular Proteomics 15 (7), pp. 2491-2500. ISSN 1535-9476.

D

D'Auria, S. and Lopes, J.L.S. and Yoneda, Juliana and Martins, J.M. and DeMarco, R. and Jameson, D.M. and Castro, A.M. and Bossolan, N.R.S. and Wallace, Bonnie A. and Araujo, A.P.U. (2016) Environmental factors modulating the stability and enzymatic activity of the Petrotoga mobilis Esterase (PmEst). PLoS One 11 (6), e0158146. ISSN 1932-6203.

Denyer, Michael P. and Pinheiro, D.Y. and Garden, O.A. and Shepherd, Adrian J. (2016) Missed, not missing: Phylogenomic evidence for the existence of Avian FoxP3. PLoS One 11 (3), e0150988. ISSN 1932-6203.

Dimartino, Mirko and Calì, Andrea and Poulovassilis, Alexandra and Wood, Peter T. (2016) Query rewriting under linear EL knowledge bases. In: Ortiz, M. and Schlobach, S. (eds.) Web Reasoning and Rule Systems: 10th International Conference, RR 2016, Aberdeen, UK, September 9-11, 2016, Proceedings. Lecture Notes in Computer Science 9898. New York, U.S.: Springer, pp. 61-76. ISBN 9783319452753.

F

Fernandes, M. and Wan, Cen and Tacutu, R. and Barardo, D. and Rajput, A. and Wang, J. and Thoppil, H. and Thornton, D. and Yang, C. and Freitas, A. and de Magalhaes, J.P. (2016) Systematic analysis of the gerontome reveals links between aging and age-related diseases. Human Molecular Genetics 25 (21), pp. 4804-4818. ISSN 0964-6906.

Fletcher, G.H.L. and Peters, J. and Poulovassilis, Alexandra (2016) Efficient regular path query evaluation using path indexes. In: Pitoura, E. and Maabout, S. and Koutrika, G. and Marian, A. and Tanca, L. and Manolescu, I. and Stefanidis, K. (eds.) 19th International Conference on Extending Database Technology Bordeaux, France, March 15–18, 2016 Proceedings. Bordeaux, France: OpenProceedings.org, pp. 636-639. ISBN 9783893180707.

G

Gutierrez-Santos, Sergio and Capuzzi, Stefano and Kahn, Ken and Karkalas, Sokratis and Poulovassilis, Alexandra (2016) Scalable monitoring of student interaction indicators in exploratory learning environments. In: UNSPECIFIED (ed.) Proceedings of the 25th International Conference Companion on World Wide Web. Geneva, Switzerland: International World Wide Web Conferences Steering Committee, pp. 917-922. ISBN 9781450341448.

Gutierrez-Santos, Sergio and Mavrikis, M. and Geraniou, E. and Poulovassilis, Alexandra (2016) Similarity-based grouping to support teachers on collaborative activities in exploratory learning environments. IEEE Transactions on Emerging Topics in Computing (99), ISSN 2168-6750.

J

Joseph, Agnel Praveen and Malhotra, S. and Burnley, T. and Wood, C. and Clare, D.K. and Winn, M. and Topf, Maya (2016) Refinement of atomic models in high resolution EM reconstructions using Flex-EM and local assessment. Methods 100 , pp. 42-49. ISSN 1046-2023.

K

Kalscheuer, V.M. and James, V.M. and Himelright, M.L. and Long, P. and Oegema, R. and Jensen, C. and Bienek, M. and Hu, H. and Haas, S.A. and Topf, Maya and Hoogeboom, A.J.M. and Harvey, K. and Walikonis, R. and Harvey, R.J. (2016) Novel Missense Mutation A789V in IQSEC2 underlies X-Linked intellectual disability in the MRX78 family. Frontiers in Molecular Neuroscience 8 , ISSN 1662-5099.

M

Mavrikis, M. and Gutierrez-Santos, Sergio and Poulovassilis, Alexandra (2016) Design and evaluation of teacher assistance tools for exploratory learning environments. In: UNSPECIFIED (ed.) LAK '16 Proceedings of the Sixth International Conference on Learning Analytics & Knowledge. New York, U.S.: Association for Computing Machinery, pp. 168-172. ISBN 9781450341905.

Miles, Andrew J. and Wallace, Bonnie A. (2016) Circular dichroism spectroscopy of membrane proteins. Chemical Society Reviews 18 , pp. 4859-4872. ISSN 0306-0012.

Miller, Wayne and Miles, Andrew J. and Wallace, Bonnie A. (2016) Structure of the C-terminal domain of the Prokaryotic Sodium Channel Orthologue NsvBa. European Biophysics Journal with Biophysics letters 45 (8), pp. 807-814. ISSN 0175-7571.

N

Naylor, Claire and Bagneris, Claire and DeCaen, P.G. and Sula, A. and Scaglione, A. and Clapham, D.E. and Wallace, Bonnie A. (2016) Molecular basis of ion permeability in a voltage-gated sodium channel. Embo Journal 35 (8), pp. 820-830. ISSN 0261-4189.

O

Orcia, D. and Zeraik, A.E. and Lopes, J.L.S. and Macedo, J.N.A. and Santos, C.R.d. and Oliveira, K.C. and Anderson, L. and Wallace, Bonnie A. and Verjovski-Almeida, S. and Araujo, A.P.U. and DeMarco, R. (2016) Interaction of an esophageal MEG protein from schistosomes with a human S100 protein involved in inflammatory response. Biochimica et Biophysica Acta (BBA) - General Subjects 1861 (1A), pp. 3490-3497. ISSN 0304-4165.

P

Pilorge, M. and Fassier, C. and Le Corronc, H. and Potey, A. and Bai, J. and De Gois, S. and Delaby, E. and Assouline, B. and Guinchat, V. and Devillard, F. and Delorme, R. and Nygren, G. and Råstam, M. and Meier, J.C. and Otani, S. and Cheval, H. and James, V.M. and Topf, Maya and Dear, T.N. and Gillberg, C. and Leboyer, M. and Giros, B. and Gautron, S. and Hazan, J. and Harvey, R.J. and Legendre, P. and Betancur, C. (2016) Genetic and functional analyses demonstrate a role for abnormal glycinergic signaling in autism. Molecular Psychiatry 21 , pp. 936-945. ISSN 1359-4184.

Poulovassilis, Alexandra and Al-Tawil, M. and Frosini, Riccardo and Dimartino, Mirko and Dimitrova, V. (2016) Combining flexible queries and knowledge anchors to facilitate the exploration of knowledge graphs. In: 5th International Workshop on Intelligent Exploration of Semantic Data (IESD 2016), 17-21 Oct 2016, Co-located with the 15th International Semantic Web Conference (ISWC 2016), Kobe, Japan. (Unpublished)

Poulovassilis, Alexandra and Selmer, Petra and Wood, Peter T. (2016) Approximation and relaxation of semantic web path queries. Web Semantics: Science, Services and Agents on the World Wide Web 40 , pp. 1-21. ISSN 1570-8268.

S

Sumrall, J.M. and Fletcher, G.H.L. and Poulovassilis, Alexandra and Svensson, J. and Vejlstrup, M. and Vest, C. and Webber, J. (2016) Investigations on path indexing for graph databases. In: Desprez, F. and Dutot, P.-F. and Kaklamanis, C. and Marchal, L. and Molitorisz, K. and Ricci, L. and Scarano, V. and Vega-Rodriguez, M.A. and Varbanescu, A.L. and Hunold, S. and Scott, S.L. and Lankes, S. and Weidendorfer, J. (eds.) Euro-Par 2016: Parallel Processing Workshops. Lecture Notes in Computer Science 10104. Grenoble, Switzerland: Springer, pp. 532-544. ISBN 9783319589428.

W

Wan, Cen and Freitas, A. (2016) A new hierarchical redundancy eliminated tree augmented naive Bayes classifier for coping with gene ontology-based features. In: The 33rd International Conference on Machine Learning (ICML) Workshop on Computational Biology, 24th June 2016, New York.

Wells, M. and Wollenschlaeger, Alex and Lefevre, D. and Magoulas, George D. and Poulovassilis, Alexandra (2016) Analysing engagement in an online management programme and implications for course design. In: UNSPECIFIED (ed.) LAK '16 Proceedings of the Sixth International Conference on Learning Analytics & Knowledge. New York, U.S.: Association for Computing Machinery. ISBN 9781450341905.

Whitmore, Lee and Miles, Andrew J. and Mavridis, L. and Janes, R.W. and Wallace, Bonnie A. (2016) PCDDB: new developments at the Protein Circular Dichroism Data Bank. Nucleic Acids Research 45 (D1), D303-D307. ISSN 0305-1048.

Z

Zeev-Ben-Mordehai, T. and Vasishtan, D. and Hernández Durán, A. and Vollmer, B. and White, P. and Prasad Pandurangan, A. and Siebert, C.A. and Topf, Maya and Grünewald, K. (2016) Two distinct trimeric conformations of natively membrane-anchored full-length herpes simplex virus 1 glycoprotein B. Proceedings of the National Academy of Sciences of the United States of America 113 (15), pp. 4176-4181. ISSN 0027-8424.