December 2008

Taylor, J.D. and Ababou, A. and Fawaz, R.R. and Hobbs, C.J. and Williams, Mark A. and Ladbury, J.E. (2008) Structure, dynamics, and binding thermodynamics of the v-Src SH2 domain: implications for drug design. Proteins: Structure, Function, and Bioinformatics 73 (4), pp. 929-940. ISSN 0887-3585.

Olsson, T.S.G. and Williams, Mark A. and Pitt, W.R. and Ladbury, J.E. (2008) The thermodynamics of protein–ligand interaction and solvation: insights for ligand design. Journal of Molecular Biology 384 (4), pp. 1002-1017. ISSN 0022-2836.

2009

Nilapwar, S. and Smith, E.P. and Fu, C. and Prodromou, C. and Pearl, L.H. and Williams, Mark A. and Ladbury, J.E. (2009) Structural-thermodynamics relationships of interactions in the N-terminal ATP binding domain of Hsp90. Journal of Molecular Biology 392 (4), pp. 923-936. ISSN 0022-2836.

Nilapwar, S. and Williams, E. and Fu, C. and Prodromou, C. and Pearl, L.H. and Williams, Mark A. and Ladbury, J.E. (2009) Structural–thermodynamic relationships of interactions in the N-Terminal ATP-Binding domain of Hsp90. Journal of Molecular Biology 392 (4), pp. 923-936. ISSN 0022-2836.

January 2011

Henderson, B. and Nair, S.P. and Pallas, J. and Williams, Mark A. (2011) Fibronectin: a multidomain host adhesin targeted by bacterial fibronectin-binding proteins. FEMS Microbiology Reviews 35 (1), pp. 147-200. ISSN 1574-6976.

10 February 2011

da Fonsceca, P.C.A. and Kong, E.H. and Zhang, Z. and Schreiber, A. and Williams, Mark A. and Morris, E.P. and Barford, D. (2011) Structures of APC/C-CDH1 with substrates identify Cdh1 and Apc10 as the D-box co-receptor. Nature 470 , pp. 274-278. ISSN 0028-0836.

11 February 2011

Edwards, M.J. and Williams, Mark A. and Maxwell, A. and McKay, A.R. (2011) Mass spectrometry reveals that the antibiotic simocyclinone D8 binds to DNA gyrase in a "bent-over" conformation: evidence for positive cooperativity in binding. Biochemistry 50 (17), pp. 3432-3440. ISSN 0006-2960.

2 August 2011

Olsson, T.S.G. and Pitt, W.R. and Ladbury, J.E. and Williams, Mark A. (2011) The extent of enthalpy-entropy compensation in protein-ligand interactions. Protein Science 20 (9), pp. 1607-1618. ISSN 0961-8368.

14 March 2012

Ashford, Paul and Moss, David S. and Alex, A. and Yeap, S.K. and Povia, Alice and Nobeli, Irene and Williams, Mark A. (2012) Visualization of variable binding pockets on protein surfaces by probabilistic analysis of related structure sets. BMC Bioinformatics 13 , p. 39. ISSN 1471-2105.

2013

Daviter, Tina and Chmel, N. and Rodger, A. (2013) Circular and linear dichroism spectroscopy for the study of protein–ligand interactions. In: Williams, Mark A. and Daviter, Tina (eds.) Protein–Ligand Interactions: Fundamentals. Methods in Molecular Biology III 1008. Berlin, Germany: Springer, pp. 211-241. ISBN 9781627033978.

Lowe, P.N. and Vaughan, Cara K. and Daviter, Tina (2013) Measurement of protein–ligand complex formation. In: Williams, Mark A. and Daviter, Tina (eds.) Protein–Ligand Interactions: Fundamentals. Methods in Molecular Biology I 1008. Berlin, Germany: Springer, pp. 63-99. ISBN 9781627033978.

Daviter, Tina and Fronzes, Remi (2013) Protein sample characterization. In: Williams, Mark A. and Daviter, Tina (eds.) Protein–Ligand Interactions: Fundamentals. Methods in Molecular Biology I 1008. Berlin, Germany: Springer, pp. 35-62. ISBN 9781627033978.

Williams, Mark A. (2013) Protein-ligand interactions: fundamentals. In: Williams, Mark A. and Daviter, Tina (eds.) Protein–Ligand Interactions: Fundamentals. Methods in Molecular Biology I 1008. Berlin, Germany: Springer, pp. 3-34. ISBN 9781627033978.

Turnbull, Andrew P. and Emsley, P. (2013) Studying protein–ligand interactions using x-ray crystallography. In: Williams, Mark A. and Daviter, Tina (eds.) Protein–Ligand Interactions: Fundamentals. Methods in Molecular Biology VI 1008. Berlin, Germany: Springer, pp. 457-477. ISBN 9781627033978.

February 2014

Studer, R. A. and Christin, P.-A. and Williams, Mark A. and Orengo, C.A. (2014) Stability-activity tradeoffs constrain the adaptive evolution of RubisCO. Proceedings of the National Academy of Sciences of the United States of America 111 (6), pp. 2223-2228. ISSN 0027-8424.

11 July 2015

Quay, Doris H.X. and Cole, Ambrose R. and Cryar, A. and Thalassinos, Konstantinos and Williams, Mark A. and Bhakta, Sanjib and Keep, Nicholas H. (2015) Structure of the stationary phase survival protein YuiC from B.subtilis. BMC Structural Biology 15 (12), ISSN 1472-6807.

13 June 2017

Williams, Mark A. (2017) Apparent equilibrium thermodynamics of protein-ligand binding reactions. In: Lide, D.R. (ed.) CRC Handbook of Chemistry and Physics, 98th Edition. Florida, U.S.: CRC Press. ISBN 9781498784542.

March 2018

Sivalingam, G.N. and Cryar, A. and Williams, Mark A. and Gooptu, Bibekbrata and Thalassinos, Konstantinos (2018) Deconvolution of ion mobility mass spectrometry arrival time distributions using a genetic algorithm approach: application to α1-antitrypsin peptide binding. International Journal of Mass Spectrometry 426 , pp. 29-37. ISSN 1387-3806.

May 2021

Paketurytė, V. and Petrauskas, V. and Zubrienė, A. and Abian, O. and Bastos, M. and Chen, W.-Y. and Moreno, M.J. and Krainer, G. and Linkuvienė, V. and Sedivy, A. and Velazquez-Campoy, A. and Williams, Mark A. and Matulis, D. (2021) Uncertainty of protein-ligand binding constants: asymmetric confidence intervals versus standard errors. European Biophysics Journal with Biophysics letters 50 , pp. 661-670. ISSN 0175-7571.