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BMC Bioinformatics

Ashford, Paul and Moss, David S. and Alex, A. and Yeap, S.K. and Povia, Alice and Nobeli, Irene and Williams, Mark A. (2012) Visualization of variable binding pockets on protein surfaces by probabilistic analysis of related structure sets. BMC Bioinformatics 13 , p. 39. ISSN 1471-2105.

BMC Structural Biology

Quay, Doris H.X. and Cole, Ambrose R. and Cryar, A. and Thalassinos, Konstantinos and Williams, Mark A. and Bhakta, Sanjib and Keep, Nicholas H. (2015) Structure of the stationary phase survival protein YuiC from B.subtilis. BMC Structural Biology 15 (12), ISSN 1472-6807.

Biochemistry

Edwards, M.J. and Williams, Mark A. and Maxwell, A. and McKay, A.R. (2011) Mass spectrometry reveals that the antibiotic simocyclinone D8 binds to DNA gyrase in a "bent-over" conformation: evidence for positive cooperativity in binding. Biochemistry 50 (17), pp. 3432-3440. ISSN 0006-2960.

European Biophysics Journal with Biophysics letters

Paketurytė, V. and Petrauskas, V. and Zubrienė, A. and Abian, O. and Bastos, M. and Chen, W.-Y. and Moreno, M.J. and Krainer, G. and Linkuvienė, V. and Sedivy, A. and Velazquez-Campoy, A. and Williams, Mark A. and Matulis, D. (2021) Uncertainty of protein-ligand binding constants: asymmetric confidence intervals versus standard errors. European Biophysics Journal with Biophysics letters 50 , pp. 661-670. ISSN 0175-7571.

FEMS Microbiology Reviews

Henderson, B. and Nair, S.P. and Pallas, J. and Williams, Mark A. (2011) Fibronectin: a multidomain host adhesin targeted by bacterial fibronectin-binding proteins. FEMS Microbiology Reviews 35 (1), pp. 147-200. ISSN 1574-6976.

International Journal of Mass Spectrometry

Sivalingam, G.N. and Cryar, A. and Williams, Mark A. and Gooptu, Bibekbrata and Thalassinos, Konstantinos (2018) Deconvolution of ion mobility mass spectrometry arrival time distributions using a genetic algorithm approach: application to α1-antitrypsin peptide binding. International Journal of Mass Spectrometry 426 , pp. 29-37. ISSN 1387-3806.

Journal of Molecular Biology

Nilapwar, S. and Smith, E.P. and Fu, C. and Prodromou, C. and Pearl, L.H. and Williams, Mark A. and Ladbury, J.E. (2009) Structural-thermodynamics relationships of interactions in the N-terminal ATP binding domain of Hsp90. Journal of Molecular Biology 392 (4), pp. 923-936. ISSN 0022-2836.

Nilapwar, S. and Williams, E. and Fu, C. and Prodromou, C. and Pearl, L.H. and Williams, Mark A. and Ladbury, J.E. (2009) Structural–thermodynamic relationships of interactions in the N-Terminal ATP-Binding domain of Hsp90. Journal of Molecular Biology 392 (4), pp. 923-936. ISSN 0022-2836.

Olsson, T.S.G. and Williams, Mark A. and Pitt, W.R. and Ladbury, J.E. (2008) The thermodynamics of protein–ligand interaction and solvation: insights for ligand design. Journal of Molecular Biology 384 (4), pp. 1002-1017. ISSN 0022-2836.

Methods In Molecular Biology

Daviter, Tina and Chmel, N. and Rodger, A. (2013) Circular and linear dichroism spectroscopy for the study of protein–ligand interactions. In: Williams, Mark A. and Daviter, Tina (eds.) Protein–Ligand Interactions: Fundamentals. Methods in Molecular Biology III 1008. Berlin, Germany: Springer, pp. 211-241. ISBN 9781627033978.

Lowe, P.N. and Vaughan, Cara K. and Daviter, Tina (2013) Measurement of protein–ligand complex formation. In: Williams, Mark A. and Daviter, Tina (eds.) Protein–Ligand Interactions: Fundamentals. Methods in Molecular Biology I 1008. Berlin, Germany: Springer, pp. 63-99. ISBN 9781627033978.

Daviter, Tina and Fronzes, Remi (2013) Protein sample characterization. In: Williams, Mark A. and Daviter, Tina (eds.) Protein–Ligand Interactions: Fundamentals. Methods in Molecular Biology I 1008. Berlin, Germany: Springer, pp. 35-62. ISBN 9781627033978.

Williams, Mark A. (2013) Protein-ligand interactions: fundamentals. In: Williams, Mark A. and Daviter, Tina (eds.) Protein–Ligand Interactions: Fundamentals. Methods in Molecular Biology I 1008. Berlin, Germany: Springer, pp. 3-34. ISBN 9781627033978.

Turnbull, Andrew P. and Emsley, P. (2013) Studying protein–ligand interactions using x-ray crystallography. In: Williams, Mark A. and Daviter, Tina (eds.) Protein–Ligand Interactions: Fundamentals. Methods in Molecular Biology VI 1008. Berlin, Germany: Springer, pp. 457-477. ISBN 9781627033978.

Nature

da Fonsceca, P.C.A. and Kong, E.H. and Zhang, Z. and Schreiber, A. and Williams, Mark A. and Morris, E.P. and Barford, D. (2011) Structures of APC/C-CDH1 with substrates identify Cdh1 and Apc10 as the D-box co-receptor. Nature 470 , pp. 274-278. ISSN 0028-0836.

Proceedings of the National Academy of Sciences of the United States of America

Studer, R. A. and Christin, P.-A. and Williams, Mark A. and Orengo, C.A. (2014) Stability-activity tradeoffs constrain the adaptive evolution of RubisCO. Proceedings of the National Academy of Sciences of the United States of America 111 (6), pp. 2223-2228. ISSN 0027-8424.

Protein Science

Olsson, T.S.G. and Pitt, W.R. and Ladbury, J.E. and Williams, Mark A. (2011) The extent of enthalpy-entropy compensation in protein-ligand interactions. Protein Science 20 (9), pp. 1607-1618. ISSN 0961-8368.

Proteins: Structure, Function, and Bioinformatics

Taylor, J.D. and Ababou, A. and Fawaz, R.R. and Hobbs, C.J. and Williams, Mark A. and Ladbury, J.E. (2008) Structure, dynamics, and binding thermodynamics of the v-Src SH2 domain: implications for drug design. Proteins: Structure, Function, and Bioinformatics 73 (4), pp. 929-940. ISSN 0887-3585.